Search Hotels in Mission Bay, San Francisco

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Save instantly and earn perks with One Key
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

LUMA Hotel San Francisco

LUMA Hotel San Francisco
4.0 star property
Mission Bay
9.6 out of 10, Exceptional, (2,459 reviews)
"Excellent hotel "
United States
Alexis
The price is £172
includes taxes & fees
18 Apr - 19 Apr
LUMA Hotel San Francisco

Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 2.8 mi from Mission Bay
9.0 out of 10, Wonderful, (7,404 reviews)
"Loved location, kind staff, parking, clean and comfy rooms plus a decent breakfast!"
United States
Debra
The price is £152
includes taxes & fees
27 Apr - 28 Apr
Hotel Riu Plaza Fisherman's Wharf

The Evergreen

The Evergreen
2.0 star property
12.6 mi from Mission Bay
9.2 out of 10, Wonderful, (505 reviews)
"Great location, reasonable price, rooms were comfortable and clean"
United States
Douglas
The price is £109
includes taxes & fees
15 Apr - 16 Apr
The Evergreen

Hilton San Francisco Airport Bayfront

Hilton San Francisco Airport Bayfront
4.0 star property
12.8 mi from Mission Bay
8.6 out of 10, Excellent, (2,948 reviews)
"Convenient location close to the airport. The hotel was nice and excellent staff."
United States
Shawna
The price is £100
includes taxes & fees
18 Apr - 19 Apr
Hilton San Francisco Airport Bayfront

The Marina Inn on San Francisco Bay

The Marina Inn on San Francisco Bay
3.5 star property
12.2 mi from Mission Bay
8.6 out of 10, Excellent, (2,402 reviews)
"The staff was excelent with us and good food."
United States
Walkiria
The price is £89
includes taxes & fees
17 Apr - 18 Apr
The Marina Inn on San Francisco Bay

DoubleTree by Hilton San Francisco Airport

DoubleTree by Hilton San Francisco Airport
4.0 star property
12.6 mi from Mission Bay
8.6 out of 10, Excellent, (1,507 reviews)
"Very nice hotel, clean, Starbucks onsite, and great breakfast choices."
United States
Fritz Lou
The price is £96
includes taxes & fees
8 May - 9 May
DoubleTree by Hilton San Francisco Airport

Aloft San Francisco Airport

Aloft San Francisco Airport
3.0 star property
11.6 mi from Mission Bay
9.0 out of 10, Wonderful, (2,267 reviews)
"Great place"
Canada
Mark
The price is £108
includes taxes & fees
25 Apr - 26 Apr
Aloft San Francisco Airport

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
Fisherman's Wharf, 2.8 mi from Mission Bay
8.6 out of 10, Excellent, (2,521 reviews)
"Great location "
United States
Ramona
The price is £156
includes taxes & fees
24 Apr - 25 Apr
Hotel Zephyr San Francisco

Hampton Inn & Suites Oakland Airport-Alameda

Hampton Inn & Suites Oakland Airport-Alameda
2.5 star property
8.7 mi from Mission Bay
8.8 out of 10, Excellent, (1,007 reviews)
"Clean room, food is excellent and staff are helpful"
United States
Juvy V
The price is £94
includes taxes & fees
3 May - 4 May
Hampton Inn & Suites Oakland Airport-Alameda

Hyatt Place San Francisco Downtown

Hyatt Place San Francisco Downtown
3.0 star property
0.6 mi from Mission Bay
9.4 out of 10, Exceptional, (2,101 reviews)
"Wonderful stay!"
United States
Lauren
The price is £191
includes taxes & fees
18 Apr - 19 Apr
Hyatt Place San Francisco Downtown

Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 2.9 mi from Mission Bay
9.0 out of 10, Wonderful, (3,867 reviews)
"Staff is really nice and rooms are always clean "
United States
Gina
The price is £161
includes taxes & fees
19 Apr - 20 Apr
Hotel Caza Fisherman's Wharf

Cow Hollow Inn & Suites

Cow Hollow Inn & Suites
3.5 star property
Marina District, 3.2 mi from Mission Bay
9.2 out of 10, Wonderful, (1,575 reviews)
"Perfect location and friendly staff Would go again"
United Kingdom
Mrs Meeta
The price is £96
includes taxes & fees
6 May - 7 May
Cow Hollow Inn & Suites

Best Western Plus Grosvenor Airport Hotel

Best Western Plus Grosvenor Airport Hotel
3.0 star property
8.8 mi from Mission Bay
8.4 out of 10, Very good, (1,760 reviews)
"Great stay"
United States
Jeff
The price is £92
includes taxes & fees
17 Apr - 18 Apr
Best Western Plus Grosvenor Airport Hotel

Hotel Aura SFO

Hotel Aura SFO
3.0 star property
10.6 mi from Mission Bay
9.0 out of 10, Wonderful, (2,614 reviews)
"The location, clean room and friendly staff would stay here again"
United States
Allyson
The price is £95
includes taxes & fees
26 Apr - 27 Apr
Hotel Aura SFO

DoubleTree by Hilton San Francisco South Airport Blvd

DoubleTree by Hilton San Francisco South Airport Blvd
4.0 star property
8.6 mi from Mission Bay
8.4 out of 10, Very good, (2,229 reviews)
"clean and nice stay"
United States
kathleen
The price is £91
includes taxes & fees
25 Apr - 26 Apr
DoubleTree by Hilton San Francisco South Airport Blvd

DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina
4.0 star property
8 mi from Mission Bay
8.2 out of 10, Very good, (4,460 reviews)
"I love staying here. The location is beautiful and serene while the rooms are well taken care of. "
United States
Marisa
The price is £117
includes taxes & fees
19 Apr - 20 Apr
DoubleTree by Hilton Hotel Berkeley Marina

Hotel Aluxor SFO

Hotel Aluxor SFO
2.5 star property
10.3 mi from Mission Bay
8.6 out of 10, Excellent, (2,899 reviews)
"Hotel was very nice for the price"
United States
Daniel
The price is £99
includes taxes & fees
17 Apr - 18 Apr
Hotel Aluxor SFO

Vagabond Inn Executive San Francisco Airport

Vagabond Inn Executive San Francisco Airport
2.5 star property
11.9 mi from Mission Bay
8.0 out of 10, Very good, (1,016 reviews)
"Friendly staff, clean rooms, all the conveniences needed to make the stay great! "
United States
Justina
The price is £80
includes taxes & fees
26 Apr - 27 Apr
Vagabond Inn Executive San Francisco Airport

Embassy Suites by Hilton San Francisco Airport Waterfront

Embassy Suites by Hilton San Francisco Airport Waterfront
3.5 star property
12.6 mi from Mission Bay
8.6 out of 10, Excellent, (2,046 reviews)
"Great visit!"
United States
Suvra
The price is £123
includes taxes & fees
24 Apr - 25 Apr
Embassy Suites by Hilton San Francisco Airport Waterfront

La Quinta Inn & Suites by Wyndham San Francisco Airport West

La Quinta Inn & Suites by Wyndham San Francisco Airport West
3.0 star property
11.1 mi from Mission Bay
8.6 out of 10, Excellent, (1,634 reviews)
"Clean rooms, nice pool, good location. "
United States
John
The price is £112
includes taxes & fees
17 Apr - 18 Apr
La Quinta Inn & Suites by Wyndham San Francisco Airport West
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Fisherman's Wharf

This waterfront neighborhood dates back to the gold rush era and is a hub for tourist activities, sea lions and seafood restaurants.

Union Square

Fashion puts on its finest face in one of the country’s largest shopping plazas.

Downtown San Francisco

Known for its fascinating museums, popular shops and acclaimed art galleries, there's plenty to explore in Downtown San Francisco. Top attractions like Oracle Park and San Francisco Bay are major draws. Catch the metro at Market St & 5th St Stop or Market St & Taylor St Stop to see more of the city.

North Beach

Better known as Little Italy, this neighborhood was once a hotspot for counterculture and features an array of bars, jazz clubs, galleries and cafés.

Nob Hill

Examine architecturally significant buildings, visit the Cable Car Museum and enjoy magnificent views of greater San Francisco in this affluent district.

Top Mission Bay Hotel Reviews

Frequently asked questions

What are the best family hotels in Mission Bay?
For family-friendly accommodation in Mission Bay, consider the Four Seasons Hotel San Francisco, the Palace Hotel, a Luxury Collection Hotel, San Francisco, and the Four Seasons Hotel San Francisco at Embarcadero.

The 5-star Four Seasons Hotel San Francisco, with a superb 9.4 rating, offers excellent amenities for families, including supervised childcare for children, connecting rooms, and a pool. Guests frequently praise the friendly and helpful staff, the nice rooms, and the wonderful food.

Another excellent choice is the 5-star Palace Hotel, a Luxury Collection Hotel, San Francisco, rated 9.2. This hotel provides complimentary cribs, connecting rooms, and a pool, ensuring a comfortable stay for families. Guests often highlight the amazing staff, clean rooms, and the beautiful, clean pool.

The 5-star Four Seasons Hotel San Francisco at Embarcadero, boasting an exceptional 9.6 rating, is also a fantastic option for families. It offers sofa beds, complimentary cribs, and connecting rooms. Reviewers frequently praise the attentive staff, the amazing rooms, and the great amenities. It is conveniently located near the Asia Society and Museum, just 0.4 km away.

The 4.5-star The Westin St. Francis San Francisco on Union Square, with an 8.8 rating, is another great option, providing connecting rooms, child-friendly window design, and onsite babysitting services. Guests appreciate the friendly staff, spacious rooms, and comfortable beds.

Finally, the 4-star Hilton San Francisco Union Square, rated 8.4, is well-suited for families with amenities like rollaway extra beds, a pool with a gate, and connecting rooms. Reviewers often mention the friendly staff and the comfortable rooms.
What are the best 5-star hotels in Mission Bay?
For 5-star hotels in Mission Bay, consider the Taj Campton Place, The St. Regis San Francisco, Four Seasons Hotel San Francisco, The Ritz-Carlton, San Francisco, or the Palace Hotel, a Luxury Collection Hotel, San Francisco.

The 5-star Taj Campton Place, with a 9.2 rating, offers excellent amenities such as 24-hour room service, premium bedding, and designer toiletries. Guests frequently praise the excellent staff and comfortable rooms, as well as the beautiful on-site restaurant. It is conveniently located in a shopping district.

Another superb option is The St. Regis San Francisco, a 5-star hotel rated 9.4. This hotel provides luxurious features including rainfall showerheads, Frette Italian sheets, and deep soaking bathtubs. Its location is also ideal for shopping, and it is just 0.4 km from Yerba Buena Ice Skating Centre. Guests consistently praise the great service and clean rooms.

The Four Seasons Hotel San Francisco, a 5-star hotel with a 9.4 rating, provides premium bedding, champagne service, and 24-hour room service. Reviewers often highlight the friendly and helpful staff, wonderful food, and great gym. It is situated in a shopping district and is 0.6 km from Yerba Buena Ice Skating Centre.

The Ritz-Carlton, San Francisco, a 5-star hotel with a 9.4 rating, features designer stores on-site, Frette Italian sheets, and a club level room with lounge access. Guests consistently mention the beautiful, clean rooms, and the friendly, wonderful staff. It is located in a shopping district and is just 0.3 km from the 450 Sutter Building.

Finally, the Palace Hotel, a Luxury Collection Hotel, San Francisco, is a 5-star hotel rated 9.2. This hotel offers designer toiletries, Frette Italian sheets, and rainfall showerheads. Guests frequently appreciate the amazing staff, comfortable and clean rooms, and the beautiful pool. It is conveniently located in a shopping district, just 0.0 km from the Crocker Bank Building.
What are the best spa hotels in Mission Bay?
There are several excellent spa hotels in Mission Bay, including the 1 Hotel San Francisco, the Four Seasons Hotel San Francisco, and the Hotel Nikko San Francisco.

The 5-star 1 Hotel San Francisco, with a 9.2 rating, offers an extensive spa experience with multiple treatment rooms, including couples' treatment rooms. Guests can enjoy various massages, such as Swedish and hot stone, along with aromatherapy, body scrubs, deep tissue massage, and hydrotherapy treatments. The spa is onsite and accessible daily. It is also conveniently located just 0.8 km from the Asia Society and Museum.

Another fantastic option is the 5-star Four Seasons Hotel San Francisco, rated 9.4. This hotel boasts a full-service, accessible spa with a steam room. They provide a wide array of services including massages, body scrubs, manicures and pedicures, body treatments, Ayurvedic treatments, body wraps, and facial treatments. The spa is available daily on-site. The hotel is situated close to the Crocker Bank Building, only 0.3 km away.

The 4.5-star Hotel Nikko San Francisco, with an impressive 9.4 rating, features an accessible spa with a steam room. While fewer specific treatments are listed, its high rating and spa facilities make it a strong contender for a relaxing stay. The hotel is conveniently located 0.4 km from the 450 Sutter Building.
What hotels in Mission Bay offer free breakfast?
For hotels in Mission Bay that offer complimentary breakfast, consider the Hyatt Regency San Francisco, Inn At Union Square, InterContinental San Francisco by IHG, Harbor Court Hotel, or the San Francisco Marriott Union Square.

The 4-star Hyatt Regency San Francisco, with an impressive 9.2 rating, offers a free continental breakfast in its Club Level Lounge. Guests frequently describe the rooms as comfortable and clean, and the location as convenient and great. The hotel is very close to the San Francisco Railway Museum, just 0.2 km away.

The Inn At Union Square, rated 9.2, provides a free continental breakfast for all guests. Its location is often highlighted as convenient and great, and the rooms are noted for being comfortable and clean. It is conveniently located just 0.4 km from Robert Moses Kin.

The 4-star InterContinental San Francisco by IHG, also with a 9.2 rating, includes a complimentary buffet breakfast in its Club Level Lounge. Guests praise the staff as great and professional, and the rooms as nice and clean.

The 4-star Harbor Court Hotel, with a 9.0 rating, offers a free continental breakfast. Reviewers often mention the comfortable and clean rooms, and the excellent and great location. The San Francisco Railway Museum is a mere 0.2 km from the hotel.

Finally, the 4-star San Francisco Marriott Union Square, rated 9.0, provides a free continental breakfast in its Club Level Lounge. Guests appreciate the helpful and amazing staff, and the nice and clean rooms. Robert Moses Kin is just 0.5 km away.
What are the top pet-friendly hotels in Mission Bay?
For top pet-friendly hotels in Mission Bay, consider the Four Seasons Hotel San Francisco at Embarcadero, The Clift Royal Sonesta San Francisco, or the Executive Hotel Vintage Court.

The 5-star Four Seasons Hotel San Francisco at Embarcadero, with an impressive 9.6 rating, is an excellent choice for travellers with pets. This hotel permits both dogs and cats and provides amenities like a litter box and food and water bowls. Guests consistently praise the friendly and attentive staff, as well as the amazing rooms. It is conveniently located near points of interest such as the Asia Society and Museum and Portsmouth Square.

Another highly-rated option is the 4-star The Clift Royal Sonesta San Francisco, which has a 9.2 rating. This hotel welcomes dogs and provides food and water bowls. Reviewers frequently highlight the comfortable and clean rooms, the excellent service, and the wonderful bar. It is situated close to the Yerba Buena Ice Skating Centre.

The 3-star Executive Hotel Vintage Court, rated 8.6, is also a great pet-friendly choice, accommodating both dogs and cats and offering food and water bowls. Guests appreciate the friendly and helpful staff, the good breakfast, and the clean rooms. Its convenient location is also a frequent highlight, with the Asia Society and Museum nearby.
What are the best budget hotels in Mission Bay?
For budget-friendly accommodation in Mission Bay, consider the Hampton Inn San Francisco Downtown/Convention Center or YOTEL San Francisco.

The 3-star Hampton Inn San Francisco Downtown/Convention Center, with a 7.8 rating, offers guests complimentary buffet and continental breakfast, along with free WiFi. Guests frequently mention the nice, clean rooms, friendly and helpful staff, and the convenient location. It is located 0.3 km from Robert Moses Kin.

Another excellent option is the 3-star YOTEL San Francisco, rated 8.2. This hotel provides free breakfast, including a to-go option, and free WiFi. Guests often praise the perfect, clean rooms, great staff, and modern amenities. It is situated 0.7 km from Robert Moses Kin.

The City Center Inn & Suites, rated 7.2, also offers value with free self-parking, free toiletries, free WiFi, and complimentary breakfast, including a to-go option. Guests appreciate the free and easy parking, comfortable and clean rooms, and friendly staff. It is 0.9 km from Robert Moses Kin.

The 3-star Fitzgerald Hotel, with a 7.8 rating, provides free WiFi, complimentary continental breakfast, and free toiletries. Guests highlight its great location, comfortable and clean rooms, and nice staff. It is 0.5 km from Robert Moses Kin.

Finally, the 3-star Warfield Hotel offers free continental breakfast, free toiletries, and free WiFi. Guests often comment on the nice and amazing staff, and the excellent location. It is located 0.4 km from Robert Moses Kin.
What are the best hotels in Mission Bay near Ferry Building?
For hotels in Mission Bay, California, near the Ferry Building, the Omni San Francisco Hotel is a highly recommended option.

The 4.5-star Omni San Francisco Hotel, with an outstanding 9.6 rating, offers a luxurious stay with amenities such as Egyptian cotton sheets, premium bedding, and designer toiletries. Guests frequently praise the friendly and helpful staff, the comfortable and clean rooms, and the convenient location. The hotel provides options like rollaway extra beds, sofa beds, and free cribs, making it suitable for families, and also offers connecting rooms for added convenience. Valet parking, including a secured and covered option, is available. The hotel is within easy reach of several points of interest, including Portsmouth Square, just 0.3 km away, and the San Francisco Railway Museum, 0.8 km away.
When is the best time to go to Mission Bay?
The best time to visit Mission Bay is typically from late spring to early autumn, specifically from May to October, when the weather is at its finest for outdoor activities.

During these months, you'll experience consistently warm temperatures, clear skies, and minimal rainfall, making it ideal for spending time on the water or enjoying the beaches. The ocean breezes keep things comfortable, preventing it from getting too hot. This period is superb for those looking to enjoy sailing, paddleboarding, or simply relaxing by the bay.

Families often find the summer months, particularly July and August, to be the most convenient for a trip. The kids are out of school, and there are many family-friendly events and activities happening around the bay. While it's a popular time, the extensive coastline and various parks mean there's always space to enjoy.

For couples looking for a slightly more relaxed experience with excellent weather, May, June, September, and October are superb choices.
Can I cancel my hotel reservation on Expedia?
You can cancel your hotel reservation on Expedia, though it depends on the cancellation policy of your booking. Most bookings are refundable if canceled within 24-48 hours of the scheduled arrival. Be sure to check your booking confirmation for the exact cancellation policy. If free cancellation is available, you can cancel directly through your Expedia account by logging in, going to "My Trips", and selecting your reservation. To find flexible deals, filter your search by "Fully refundable property" for hotels in Mission Bay.
How can I save on a Mission Bay hotel booking with Expedia?
Members always get our best prices. Find our best Mission Bay hotel deals by joining Expedia's free travel rewards program today. As a member, you can unlock instant savings and member perks when you're logged in to your account. Another tip is to book your hotel and flights together on Expedia, where bundling can result in significant savings.
How much is the nightly rate at a Mission Bay hotel?
Hotel prices in Mission Bay often vary, but you can find a great deal on Expedia. Different factors affect nightly hotel rates, such as the time of year or the days of the week you want to book. To find the best deals for your stay, be flexible with your dates, and sort search results by "Price: low to high" for our cheapest rates.

Explore a world of travel with Expedia