The Best Hotels Closest to Boot Key Harbor in Marathon - 2026 Updated Prices

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Our top choices for Boot Key Harbor hotels

A resort with a swimming pool, lounge chairs, and a view of the ocean.

1. Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort

0.7 mi from Boot Key Harbor

Arianna

includes taxes & fees

18 Nov - 19 Nov

A neatly made bed with a grey and white duvet, a wooden headboard, and a bedside table with a lamp and remote control.

2. Knight's Key Suites

1.7 mi from Boot Key Harbor

Brandy

includes taxes & fees

29 Nov - 30 Nov

An aerial view of a resort with a central pool, multiple buildings, and a beach area with sun loungers.

3. Isla Bella Beach Resort & Spa

1.5 mi from Boot Key Harbor

Yamila

includes taxes & fees

9 Nov - 10 Nov

Two hammocks on a sandy beach with a clear blue sky and turquoise water.

4. Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

0.5 mi from Boot Key Harbor

Keith

includes taxes & fees

2 Dec - 3 Dec

A beach with a wooden pier, palm trees, and a clear blue sky.

5. Captain Pips Marina & Hideaway

0.8 mi from Boot Key Harbor

Yi

includes taxes & fees

9 Nov - 10 Nov

A marina with boats docked, a swimming pool, and a building with a blue roof.

6. Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

0.6 mi from Boot Key Harbor

Rick

includes taxes & fees

15 Nov - 16 Nov

An outdoor seating area with wicker furniture and cushions, a thatched-roof structure, and lush greenery.

7. Tropical Cottages

1.8 mi from Boot Key Harbor

Douglas

includes taxes & fees

10 Nov - 11 Nov

8. Aqua Lodges at 47th Street Gulfside

1.2 mi from Boot Key Harbor

Lauren

includes taxes & fees

9 Dec - 10 Dec

A nighttime pool area with a clear view of the pool, surrounding palm trees, and a building with a sign.

9. Skipjack Resort & Marina

1.1 mi from Boot Key Harbor

Justin

includes taxes & fees

9 Nov - 10 Nov

Three Adirondack chairs on a sandy beach with a view of the ocean and a clear sky.

10. Banana Bay Resort & Marina

1 mi from Boot Key Harbor

Alex

includes taxes & fees

12 Nov - 13 Nov

A swimming pool surrounded by palm trees and lounge chairs.

11. Tranquility Bay Beachfront Hotel and Resort

0.4 mi from Boot Key Harbor

Shauna

includes taxes & fees

1 Dec - 2 Dec

A beach with palm trees, a sandy path, and beach chairs.

12. Aqua Lodge Rentals At Coconut Cay

2.4 mi from Boot Key Harbor

Susan

includes taxes & fees

15 Nov - 16 Nov

A hammock on a sandy beach with palm trees, a pool, and lounge chairs in the background.

13. Seascape Resort & Marina

2.5 mi from Boot Key Harbor

Jane

includes taxes & fees

8 Dec - 9 Dec

A wooden deck with a pool and chairs overlooking a beach with palm trees.

14. Grassy Flats Resort & Beach Club

9.7 mi from Boot Key Harbor

Amanda

includes taxes & fees

7 Dec - 8 Dec

A bar area with a long counter, bar stools, and a view of the water.

15. Fairfield Inn & Suites by Marriott Marathon Florida Keys

5.2 mi from Boot Key Harbor

Katelyn

includes taxes & fees

15 Nov - 16 Nov

A wooden dock leading to a row of boats, with a thatched-roof building and palm trees in the background.

16. Bonefish Bay Motel

5 mi from Boot Key Harbor

Mark

includes taxes & fees

1 Dec - 2 Dec

Three colorful drinks on a table with a thatched roof and outdoor seating.

17. Hampton Inn Marathon - Florida Keys

5.3 mi from Boot Key Harbor

Marie

includes taxes & fees

30 Nov - 1 Dec

A beach view through a window with white curtains, a wooden deck, and beach chairs.

18. Glunz Ocean Beach Hotel & Resort

5.2 mi from Boot Key Harbor

Brian

includes taxes & fees

9 Nov - 10 Nov

A covered outdoor area with a view of a pool and palm trees.

19. Kingsail Resort

2.2 mi from Boot Key Harbor

Nate

includes taxes & fees

3 Dec - 4 Dec

A marina with a dock, a boat, and a row of buildings with large windows.

20. Coconut Cay Resort & Marina

2.3 mi from Boot Key Harbor

Robert

includes taxes & fees

8 Dec - 9 Dec

View all properties

Compare popular hotels close to Boot Key Harbor

Property	Property class	Guest rating
Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort	2.5 star property	9.2 Wonderful 147 reviews	View
Knight's Key Suites	3.0 star property	9.0 Wonderful 1,245 reviews	View
Isla Bella Beach Resort & Spa	5.0 star property	9.2 Wonderful 1,302 reviews	View
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys	3.0 star property	9.0 Wonderful 1,009 reviews	View
Captain Pips Marina & Hideaway	3.0 star property	9.0 Wonderful 1,004 reviews	View

Other attractions near Boot Key Harbor

The Turtle Hospital

9.2/10 (946 reviews)

Explore the campus of The Turtle Hospital as part of your travels around Marathon. Stroll along the area's seaside or simply savour its seafood restaurants.

See properties

Top Boot Key Harbor Hotel Reviews

A marina with several docked boats and a row of small, white cabins with blue roofs.

Yacht Haven Marina

Marathon

10/10 Excellent

Lovely location, gorgeous outlook & we loved the houseboat, everything you needed and all seemed very clean & new. Made use of the free bikes to go to Sombrero Beach for a well needed swim but nice to come back for a chilled evening on the houseboat. Jo wasn’t there when we arrived but keys left in arrivals box which was great a we were early. She was very friendly & helpful when we met her the next day.

Lynne

Aqua Lodge Rentals At Coconut Cay

Marathon

10/10 Excellent

Louise

Seascape Resort & Marina

Marathon

10/10 Excellent

Anne

Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort

Marathon

10/10 Excellent

Emma

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Marathon

10/10 Excellent

Leanne

Knight's Key Suites

Marathon

10/10 Excellent

We’ve stayed before so knew what to expect. It’s a little gem. Hidden, but worth finding. The check in process was a bit stressful- they email you a few hours before check in with details. However, the email had gone into the junk mail folder so caused some confusion. The place was very, very clean. The views of the sea were breathtaking. We were made to feel very welcome… hence the return visit! I would recommend this place!

Terry

Fairfield Inn & Suites by Marriott Marathon Florida Keys

Marathon

10/10 Excellent

Rene

Bonefish Bay Motel

Marathon

10/10 Excellent

Matthew

Tranquility Bay Beachfront Hotel and Resort

Marathon

10/10 Excellent

Gillian

Aqua Lodges at 47th Street Gulfside

Marathon

8/10 Good

Martina

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

Marathon

10/10 Excellent

joanne

Kingsail Resort

Marathon

10/10 Excellent

Was based in Miami on vacation but had planned a trip to the keys so chose Kingsale Resort for our overnight stay. Check in was a smooth and the lady behind the desk (apologies cannot remember her name) was super sweet and helpful and instructions were clear and easy to understand. Had great parking outside our room. Nice large room with two large beds and the cutest throws on them. Nice equipped kitchenette, large bathroom with wardorbe/frame and awesome large shower. We also were lucky to...

Rachel

Frequently Asked Questions

What's the area like around Boot Key Harbor?

Boot Key Harbor is located in Marathon. Travellers love the area for its beautiful beaches, top seafood restaurants and dolphin watching opportunities. If you're looking for a convenient place to stay, take a look at the 216 hotels and other accommodation options you'll find within a mile.

Where is the best place to stay near Boot Key Harbor?

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 4 outdoor pools. It's located just a short 0.6 mi (1 km) from Boot Key Harbor. Other good options within a short distance include Tranquility Bay Beachfront Hotel and Resort and Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys.

How many hotels will I find close to Boot Key Harbor?

Expedia has 216 hotels and other accommodation options within a mile from Boot Key Harbor.

If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?

Yes! Most hotel reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, it might still be possible to cancel it and be given a refund within a 24-hour period of your booking. Add dates, click "Search", then filter by "fully refundable" to review top deals close to Boot Key Harbor.

What can I see and do near Boot Key Harbor?

Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.

Search Hotels Near Boot Key Harbor, Marathon

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Our top choices for Boot Key Harbor hotels

1. Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort

2. Knight's Key Suites

3. Isla Bella Beach Resort & Spa

4. Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

5. Captain Pips Marina & Hideaway

6. Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

7. Tropical Cottages

8. Aqua Lodges at 47th Street Gulfside

9. Skipjack Resort & Marina

10. Banana Bay Resort & Marina

11. Tranquility Bay Beachfront Hotel and Resort

12. Aqua Lodge Rentals At Coconut Cay

13. Seascape Resort & Marina

14. Grassy Flats Resort & Beach Club

15. Fairfield Inn & Suites by Marriott Marathon Florida Keys

16. Bonefish Bay Motel

17. Hampton Inn Marathon - Florida Keys

18. Glunz Ocean Beach Hotel & Resort

19. Kingsail Resort

20. Coconut Cay Resort & Marina

Compare popular hotels close to Boot Key Harbor

Other attractions near Boot Key Harbor

The Turtle Hospital

Top Boot Key Harbor Hotel Reviews

Yacht Haven Marina

10/10 Excellent

Frequently Asked Questions

What's the area like around Boot Key Harbor?

Where is the best place to stay near Boot Key Harbor?

How many hotels will I find close to Boot Key Harbor?

If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?

What can I see and do near Boot Key Harbor?