What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include The Dana on Mission Bay and San Diego Mission Bay Resort .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or The Dana On Mission Bay, BW Premier Collection while you're in the neighbourhood. Don't miss favourite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot and Hotel Circle. When you're sightseeing in San Diego, North Cove Beach and Marina Village Conference Center are also worth a stop.

The Best Hotels in Mission Bay, San Diego - 2026 Updated Prices

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

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Our top choices for Mission Bay hotels

A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.

1. San Diego Mission Bay Resort

Mission Bay

Evangeline

includes taxes & fees

19 Oct - 20 Oct

A pool area with a hot tub, lounge chairs, and umbrellas.

2. The Dana on Mission Bay

Mission Bay

Satish

includes taxes & fees

29 Sept - 30 Sept

A resort pool with a lazy river, palm trees, and a view of the ocean.

3. Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Linda

includes taxes & fees

1 Oct - 2 Oct

An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

4. Paradise Point Resort & Spa

Mission Bay

Adarsh

includes taxes & fees

4 Oct - 5 Oct

A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

5. Wyndham Garden San Diego Near SeaWorld

1.6 mi from Mission Bay

Nayla

includes taxes & fees

29 Sept - 30 Sept

6. Heritage Inn San Diego

1.4 mi from Mission Bay

Mark

includes taxes & fees

29 Sept - 30 Sept

A living room with a large window, a flat-screen TV, and a patterned rug.

7. GreenTree Inn San Diego Mission Bay

Pacific Beach, 1.9 mi from Mission Bay

Joseph

includes taxes & fees

29 Sept - 30 Sept

A hotel with a central courtyard, palm trees, and a fountain.

8. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 1.9 mi from Mission Bay

Edward Palacios

includes taxes & fees

27 Sept - 28 Sept

9. Comfort Inn Sea World Area

1.8 mi from Mission Bay

Rick

includes taxes & fees

29 Sept - 30 Sept

A modern building with multiple windows, outdoor seating, and a chessboard.

10. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

1.8 mi from Mission Bay

Xuan

includes taxes & fees

29 Sept - 30 Sept

A building with a "Bienvenidos" sign, palm trees, and a well-maintained garden.

11. Old Town Inn

2.2 mi from Mission Bay

Layne

includes taxes & fees

27 Sept - 28 Sept

A seaside restaurant with outdoor seating overlooking the ocean, a pier in the background, and a clear sky.

12. Ocean Beach Hotel

Ocean Beach, 2.6 mi from Mission Bay

Robert

includes taxes & fees

19 Oct - 20 Oct

A multi-story hotel with a lobby, outdoor seating, and a well-lit entrance.

13. The Alcala Hotel Mission Valley/Seaworld

2.2 mi from Mission Bay

Kori

includes taxes & fees

27 Sept - 28 Sept

A pool area with lounge chairs and palm trees.

14. Best Western Plus Hacienda Hotel Old Town

Old Town San Diego, 2.3 mi from Mission Bay

Jason

includes taxes & fees

29 Sept - 30 Sept

A historic building with a central courtyard and a reflective water feature.

15. Old Town Western Inn & Suites

Old Town San Diego, 2.5 mi from Mission Bay

Aurora

includes taxes & fees

28 Sept - 29 Sept

A modern lobby with a stone wall, blue sofas, a reception desk, and a staircase.

16. Kings Inn San Diego

3 mi from Mission Bay

Armando

includes taxes & fees

5 Oct - 6 Oct

A hotel lobby with a 'Lobby' sign, palm trees, and a sunset sky.

17. Best Western Seven Seas

3.5 mi from Mission Bay

Benjamin

includes taxes & fees

23 Sept - 24 Sept

A hotel breakfast area with a long counter displaying various food items, including fruits, pastries, and a coffee station.

18. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

2.3 mi from Mission Bay

Esmeralda

includes taxes & fees

1 Oct - 2 Oct

A modern dining area with multiple tables and chairs, large windows, and artwork on the walls.

19. Comfort Inn San Diego Old Town

Old Town San Diego, 2.5 mi from Mission Bay

Christian

includes taxes & fees

28 Sept - 29 Sept

A modern hotel room with a large bed, bedside tables, a desk, and a wardrobe.

20. Holiday Inn Express San Diego Airport - Old Town by IHG

3 mi from Mission Bay

Patricia

includes taxes & fees

1 Oct - 2 Oct

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Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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A pier at sunset with people sitting and standing, waves crashing below.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

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A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

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A beach with palm trees, a hotel, and people enjoying the sand and water.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Ocean Beach and Dog Beach.

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Top Mission Bay Hotel Reviews

Marriott Marquis San Diego Marina

10/10 Excellent

"This was an A+ property. Beautifully maintained and efficient staff. We loved lounging by the pool and how close the hotel is to everything."

Bay Club Hotel & Marina

8/10 Good

"Loved the pool and spa area. Did not love the street-facing ground floor rooms. Lights from cars entering the parking lot all night would shine into our eyes while on the patio or straight into our room. Blackout curtains helped, but there are always cracks around the edges. Not a dealbreaker, but something to be aware of. Highly recommend springing for a marina view room instead."

California Suites Hotel

8/10 Good

"Very good location. Not walkable but driving is easy to go around. The coffee at the hotel was something else, not a usual "hotel coffee". This was a great coffee to our surprise. Parking is easy to find and very available. The feel is more like being at an apartment complex. Liked it. Could go back if found a good deal."

Manchester Grand Hyatt San Diego

10/10 Excellent

"The pictures on this website are terrible. I was extremely hesitant, but because it was a Hyatt location. I decided to go with my gut because I’ve stayed at Hyatt before. When I arrived at the hotel did not disappoint. Everything was amazing. If you’re thinking to book a room at this hotel do it. I completely recommend it."

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Our top choices for Mission Bay hotels

1. San Diego Mission Bay Resort

2. The Dana on Mission Bay

3. Hyatt Regency Mission Bay Spa and Marina

4. Paradise Point Resort & Spa

5. Wyndham Garden San Diego Near SeaWorld

6. Heritage Inn San Diego

7. GreenTree Inn San Diego Mission Bay

8. Hilton Garden Inn San Diego Old Town/SeaWorld Area

9. Comfort Inn Sea World Area

10. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

11. Old Town Inn

12. Ocean Beach Hotel

13. The Alcala Hotel Mission Valley/Seaworld

14. Best Western Plus Hacienda Hotel Old Town

15. Old Town Western Inn & Suites

16. Kings Inn San Diego

17. Best Western Seven Seas

18. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

19. Comfort Inn San Diego Old Town

20. Holiday Inn Express San Diego Airport - Old Town by IHG

Where to stay in Mission Bay

Downtown San Diego

Pacific Beach

Gaslamp Quarter

Mission Beach

Ocean Beach

Top Mission Bay Hotel Reviews

Marriott Marquis San Diego Marina

Frequently asked questions