What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include The Dana on Mission Bay and Hyatt Regency Mission Bay Spa and Marina .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Dip your toes in the water at Ski Beach or Mission and Pacific Beaches while you're in Mission Bay. You could also plan a visit to Mission Bay or The Dana On Mission Bay, BW Premier Collection while you're in the neighbourhood. Don't miss favourite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot and Hotel Circle. When you're sightseeing in San Diego, Crown Point Shores and North Cove Beach are also worth a stop.

The Best Hotels in Mission Bay, San Diego - 2026 Updated Prices

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Our top choices for Mission Bay hotels

Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)

1. San Diego Mission Bay Resort

Mission Bay

Terri

includes taxes & fees

7 Sept - 8 Sept

2 outdoor pools, a heated pool, pool loungers

2. The Dana on Mission Bay

Mission Bay

Loretta

includes taxes & fees

7 Sept - 8 Sept

3 outdoor pools, pool cabanas (surcharge), pool umbrellas

3. Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Casey

includes taxes & fees

2 Sept - 3 Sept

5 outdoor pools, a heated pool, pool umbrellas, pool loungers

4. Paradise Point Resort & Spa

Mission Bay

Beatrice A

includes taxes & fees

7 Sept - 8 Sept

5. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 1.9 mi from Mission Bay

Cari

includes taxes & fees

23 Aug - 24 Aug

6. Heritage Inn San Diego

1.4 mi from Mission Bay

Ivan

includes taxes & fees

3 Sept - 4 Sept

7. Wyndham Garden San Diego Near SeaWorld

1.6 mi from Mission Bay

marissa

includes taxes & fees

31 Aug - 1 Sept

8. Comfort Inn Sea World Area

1.8 mi from Mission Bay

Ronald

includes taxes & fees

8 Sept - 9 Sept

9. GreenTree Inn San Diego Mission Bay

Pacific Beach, 1.9 mi from Mission Bay

Alma

includes taxes & fees

30 Aug - 31 Aug

In-room safe, desk, laptop workspace, blackout curtains

10. Holiday Inn Express San Diego - SeaWorld Area by IHG

1.4 mi from Mission Bay

Leslie

includes taxes & fees

7 Sept - 8 Sept

11. Old Town Inn

2.2 mi from Mission Bay

ezekiel

includes taxes & fees

26 Aug - 27 Aug

Studio Suite, 1 King Bed, Courtyard View | View from room

12. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

1.8 mi from Mission Bay

Dominador

includes taxes & fees

1 Sept - 2 Sept

13. Old Town Western Inn & Suites

Old Town San Diego, 2.5 mi from Mission Bay

Sayeeda

includes taxes & fees

8 Sept - 9 Sept

Studio Suite, 1 King Bed with Sofa bed, Balcony | View from room

14. Sheraton San Diego Resort

3.7 mi from Mission Bay

Andre

includes taxes & fees

23 Aug - 24 Aug

15. Courtyard by Marriott Old Town

Old Town San Diego, 2.4 mi from Mission Bay

Carmen

includes taxes & fees

6 Sept - 7 Sept

16. Best Western Plus Hacienda Hotel Old Town

Old Town San Diego, 2.3 mi from Mission Bay

Fernando

includes taxes & fees

23 Aug - 24 Aug

17. Crowne Plaza San Diego - Mission Valley by IHG

2.5 mi from Mission Bay

Tom

includes taxes & fees

24 Aug - 25 Aug

18. Comfort Inn San Diego Old Town

Old Town San Diego, 2.5 mi from Mission Bay

Terri

includes taxes & fees

30 Aug - 31 Aug

19. Kings Inn San Diego

3 mi from Mission Bay

Manuel

includes taxes & fees

12 Aug - 13 Aug

20. Holiday Inn Express San Diego Airport - Old Town by IHG

3 mi from Mission Bay

Tirthankar

includes taxes & fees

1 Sept - 2 Sept

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Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

A plaza with a traditional building, benches, and a large tree.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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A beach with surfers and swimmers during sunset.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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A roller coaster under construction with scaffolding and a ticket booth in the foreground.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

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Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

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A beach with palm trees, a hotel, and people enjoying the sand and water.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Ocean Beach and Dog Beach.

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Top Mission Bay Hotel Reviews

Manchester Grand Hyatt San Diego

10/10 Excellent

"Pool"

Gaylord Pacific Resort & Convention Center

8/10 Good

"The hotel is new and is very attractive for families with the waterpark. The room was very clean and had an amazing view, but I was unpleasantly surprised how uncomfortable the bed was. For the cost, I expected luxury pillowtop mattresses. The only other surprise was how long it took to check-in, and my kids were upset because all they wanted was to get into the waterpark. With 1600 rooms, I would have expected more staff at the front desks."

Bahia Resort Hotel

10/10 Excellent

"We had a wonderful stay at the Bahia Resort. The rooms were spacious, the cleaning staff came through every day, the restaurants were exceptional, and the property was very well maintained. The only downside was that for a few days there was a distinct smell of pot from our neighbors. It was not the resorts"

Search Hotels in Mission Bay, San Diego

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Our top choices for Mission Bay hotels

1. San Diego Mission Bay Resort

2. The Dana on Mission Bay

3. Hyatt Regency Mission Bay Spa and Marina

4. Paradise Point Resort & Spa

5. Hilton Garden Inn San Diego Old Town/SeaWorld Area

6. Heritage Inn San Diego

7. Wyndham Garden San Diego Near SeaWorld

8. Comfort Inn Sea World Area

9. GreenTree Inn San Diego Mission Bay

10. Holiday Inn Express San Diego - SeaWorld Area by IHG

11. Old Town Inn

12. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

13. Old Town Western Inn & Suites

14. Sheraton San Diego Resort

15. Courtyard by Marriott Old Town

16. Best Western Plus Hacienda Hotel Old Town

17. Crowne Plaza San Diego - Mission Valley by IHG

18. Comfort Inn San Diego Old Town

19. Kings Inn San Diego

20. Holiday Inn Express San Diego Airport - Old Town by IHG

Where to stay in Mission Bay

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Ocean Beach

Top Mission Bay Hotel Reviews

Manchester Grand Hyatt San Diego

Frequently asked questions