What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include The Dana on Mission Bay and San Diego Mission Bay Resort .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 37 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Enjoy a stroll along the shore at Ski Beach, Mission and Pacific Beaches and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighbourhood. Don't miss favourite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot and Hotel Circle. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.

The Best Hotels in Mission Bay, San Diego - 2026 Updated Prices

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

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Our top choices for Mission Bay hotels

A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.

1. San Diego Mission Bay Resort

Mission Bay

Mary

includes taxes & fees

22 Nov - 23 Nov

A pool area with a hot tub, lounge chairs, and umbrellas.

2. The Dana on Mission Bay

Mission Bay

Assy Prune Celia

includes taxes & fees

22 Nov - 23 Nov

A resort pool with a lazy river, palm trees, and a view of the ocean.

3. Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Megan

includes taxes & fees

19 Nov - 20 Nov

An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

4. Paradise Point Resort & Spa

Mission Bay

Jesse

includes taxes & fees

25 Oct - 26 Oct

5. Comfort Inn San Diego - SeaWorld Area

1.7 mi from Mission Bay

Jesus

includes taxes & fees

17 Nov - 18 Nov

A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

6. Holiday Inn Express San Diego - SeaWorld Area by IHG

1.4 mi from Mission Bay

Regina

includes taxes & fees

27 Oct - 28 Oct

A living room with a large window, a flat-screen TV, and a patterned rug.

7. GreenTree Inn San Diego Mission Bay

Pacific Beach, 1.9 mi from Mission Bay

Arman

includes taxes & fees

25 Oct - 26 Oct

A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

8. Wyndham Garden San Diego Near SeaWorld

1.6 mi from Mission Bay

Rebecca

includes taxes & fees

2 Nov - 3 Nov

An outdoor patio area with tables and chairs, string lights, and a building with balconies.

9. Fairfield Inn & Suites San Diego Old Town

Old Town San Diego, 2.6 mi from Mission Bay

Daniel

includes taxes & fees

25 Oct - 26 Oct

A modern dining area with wooden tables and chairs, a central bar area, and a view of the city through large windows.

10. La Quinta Inn & Suites by Wyndham San Diego Mission Bay

North Pacific Beach, 2.1 mi from Mission Bay

Amber

includes taxes & fees

1 Nov - 2 Nov

A multi-story hotel with a lobby, outdoor seating, and a well-lit entrance.

11. The Alcala Hotel Mission Valley/Seaworld

2.2 mi from Mission Bay

Alicia

includes taxes & fees

22 Nov - 23 Nov

12. Heritage Inn San Diego

1.4 mi from Mission Bay

amanda

includes taxes & fees

26 Oct - 27 Oct

An outdoor lounge area with seating, a fire feature, and a view of the building's interior.

13. Hampton Inn San Diego/Mission Valley

2.7 mi from Mission Bay

Slawomir

includes taxes & fees

31 Oct - 1 Nov

A building with a "Bienvenidos" sign, palm trees, and a well-maintained garden.

14. Old Town Inn

2.2 mi from Mission Bay

Gene

includes taxes & fees

10 Nov - 11 Nov

A modern dining area with multiple tables and chairs, large windows, and artwork on the walls.

15. Comfort Inn San Diego Old Town

Old Town San Diego, 2.5 mi from Mission Bay

George

includes taxes & fees

17 Nov - 18 Nov

A modern dining area with a large table, bar stools, and a seating area with sofas and chairs.

16. Holiday Inn Express San Diego Airport - Old Town by IHG

3 mi from Mission Bay

Patricia

includes taxes & fees

27 Oct - 28 Oct

A modern kitchen with a 'Hampton Waffle' sign, a 'Happy Breakfast Starts Here' sign, and a view into the dining area.

17. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

1.8 mi from Mission Bay

Evelin

includes taxes & fees

2 Nov - 3 Nov

A hotel lobby with a waterfall feature, outdoor seating area, and multiple floors with balconies.

18. Crowne Plaza San Diego - Mission Valley by IHG

2.5 mi from Mission Bay

Thao

includes taxes & fees

29 Oct - 30 Oct

A balcony with a metal table and chair, a wooden panel wall, and a view of a parking area with a sign reading "Sands of Jolla".

19. The Sands of La Jolla

3.5 mi from Mission Bay

Roman

includes taxes & fees

26 Oct - 27 Oct

A hotel with a central courtyard, palm trees, and a fountain.

20. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 1.9 mi from Mission Bay

Kristen

includes taxes & fees

24 Nov - 25 Nov

View all properties

Compare popular hotels in Mission Bay

Property	Property class	Guest rating
The Dana on Mission Bay	3.5 star property	9.0 Wonderful 4,470 reviews	View
Paradise Point Resort & Spa	4.0 star property	8.8 Excellent 2,948 reviews	View
San Diego Mission Bay Resort	4.0 star property	8.6 Excellent 1,649 reviews	View
Hyatt Regency Mission Bay Spa and Marina	4.0 star property	8.4 Very good 1,642 reviews	View
Ayres Hotel San Diego South - Chula Vista	3.0 star property	9.8 Exceptional 1,035 reviews	View

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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A pier extending into the ocean with buildings at the end, under a partly cloudy sky.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

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A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

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A coastal walkway with a statue, benches, and people.

Point Loma

Seaside views a bustling port and top sights from Marine Corps Recruit Depot to Shelter Island – discover Point Loma, a destination also famous for its island views.

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Top Mission Bay Hotel Reviews

Best Western Seven Seas

10/10 Excellent

"I checked in efficiently. Property is on hotel circle so that was a great ease in navigating, both getting there by taxi and telling people where to meet me. In house bartender, I wish I remember her name was funny and cool. I'll stay there again if I pass through."

The Alcala Hotel Mission Valley/Seaworld

10/10 Excellent

"I Checked In The Clerk Was Very Helpful And Professional. He Got Me A Room Very Close To The Elevator Like I Requested Due My Handicap Status. I Definitely Like The Handicap Parking Right By The Elevator Too. Oh Yeah Room Was Very Clean And Like That Shower Was A Walk In Shower. I Actually Like The Breakfast With Waffles, Eggs, Sausage, Cereal, Oatmeal, Fruit, Juice And Coffee. I Definitely Liked The Gym, Pool & Jacuzzi. I Seriously Recommend This Awesome Hotel 💯."

Hotel del Coronado, Curio Collection by Hilton

8/10 Good

"The Views offfered extraordinary experiences in comfort and location. Situated across from an HVAC station emitting near-constant turbine-like whining noises 24/7, I recommend this place to travelers with some hearing impairment for maximum comfort at night. I also struggled with bath and bathroom access in a fight with swing doors that block access to sink and shower enclosure creating a constant tangle upon entry and exit. Still, I look forward to my next visit(s)."

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Our top choices for Mission Bay hotels

1. San Diego Mission Bay Resort

2. The Dana on Mission Bay

3. Hyatt Regency Mission Bay Spa and Marina

4. Paradise Point Resort & Spa

5. Comfort Inn San Diego - SeaWorld Area

6. Holiday Inn Express San Diego - SeaWorld Area by IHG

7. GreenTree Inn San Diego Mission Bay

8. Wyndham Garden San Diego Near SeaWorld

9. Fairfield Inn & Suites San Diego Old Town

10. La Quinta Inn & Suites by Wyndham San Diego Mission Bay

11. The Alcala Hotel Mission Valley/Seaworld

12. Heritage Inn San Diego

13. Hampton Inn San Diego/Mission Valley

14. Old Town Inn

15. Comfort Inn San Diego Old Town

16. Holiday Inn Express San Diego Airport - Old Town by IHG

17. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

18. Crowne Plaza San Diego - Mission Valley by IHG

19. The Sands of La Jolla

20. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Compare popular hotels in Mission Bay

Where to stay in Mission Bay

Downtown San Diego

Pacific Beach

Gaslamp Quarter

Mission Beach

Point Loma

Top Mission Bay Hotel Reviews

Best Western Seven Seas

Frequently asked questions