What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include The Dana on Mission Bay and San Diego Mission Bay Resort .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighbourhood. Don't miss favourite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot and Hotel Circle. When you're sightseeing in San Diego, North Cove Beach and The Dana On Mission Bay, BW Premier Collection are also worth a stop.

The Best Hotels in Mission Bay, San Diego - 2026 Updated Prices

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Our top choices for Mission Bay hotels

1. San Diego Mission Bay Resort

Mission Bay

Angela

includes taxes & fees

9 Sept - 10 Sept

2. The Dana on Mission Bay

Mission Bay

elizabeth

includes taxes & fees

29 Sept - 30 Sept

3. Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Jerri

includes taxes & fees

7 Sept - 8 Sept

4. Paradise Point Resort & Spa

Mission Bay

Sandra

includes taxes & fees

7 Sept - 8 Sept

5. Wyndham Garden San Diego Near SeaWorld

1.6 mi from Mission Bay

Nayla

includes taxes & fees

13 Sept - 14 Sept

6. Holiday Inn Express San Diego - SeaWorld Area by IHG

1.4 mi from Mission Bay

nishant

includes taxes & fees

13 Sept - 14 Sept

7. GreenTree Inn San Diego Mission Bay

Pacific Beach, 1.9 mi from Mission Bay

Alexis

includes taxes & fees

13 Sept - 14 Sept

8. Urban Boutique Hotel

Little Italy, 4.9 mi from Mission Bay

Renee

includes taxes & fees

7 Sept - 8 Sept

9. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 1.9 mi from Mission Bay

Edward Palacios

includes taxes & fees

27 Sept - 28 Sept

Studio Suite, 1 King Bed, Courtyard View | View from room

10. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

1.8 mi from Mission Bay

Joshua

includes taxes & fees

8 Sept - 9 Sept

11. Comfort Inn Sea World Area

1.8 mi from Mission Bay

Rick

includes taxes & fees

13 Sept - 14 Sept

12. Heritage Inn San Diego

1.4 mi from Mission Bay

Kyle

includes taxes & fees

27 Sept - 28 Sept

13. The Alcala Hotel Mission Valley/Seaworld

2.2 mi from Mission Bay

Tranquilino

includes taxes & fees

7 Sept - 8 Sept

14. Old Town Inn

2.2 mi from Mission Bay

Layne

includes taxes & fees

28 Sept - 29 Sept

15. Fairfield Inn & Suites San Diego Old Town

Old Town San Diego, 2.6 mi from Mission Bay

Anthony

includes taxes & fees

7 Sept - 8 Sept

16. Old Town Western Inn & Suites

Old Town San Diego, 2.5 mi from Mission Bay

Stephanie

includes taxes & fees

22 Sept - 23 Sept

17. Crowne Plaza San Diego - Mission Valley by IHG

2.5 mi from Mission Bay

Veronica

includes taxes & fees

9 Sept - 10 Sept

18. Kings Inn San Diego

3 mi from Mission Bay

yasir

includes taxes & fees

6 Oct - 7 Oct

19. Courtyard by Marriott Old Town

Old Town San Diego, 2.4 mi from Mission Bay

Christine

includes taxes & fees

8 Sept - 9 Sept

20. Best Western Seven Seas

3.5 mi from Mission Bay

Colleen

includes taxes & fees

7 Sept - 8 Sept

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Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

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Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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A beach with surfers and swimmers during sunset.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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