TOP Boutique Hotels in Ecuadorian Amazon for 2026

A river surrounded by dense green forest.

Change your mind
Book hotels with free cancellation
Treat yourself
Save instantly and earn perks with One Key
Learn about One Key
Be picky
Search almost a million properties worldwide

Check availability on Ecuadorian Amazon Boutique Hotels

Tonight

Tomorrow

Next weekend

In two weeks

Our top choices for Ecuadorian Amazon boutique hotels

A wooden deck with a thatched roof structure overlooking a pool, surrounded by dense tropical vegetation.

A modern building with a wooden exterior and a thatched roof entrance.

A wooden cabin with a balcony, surrounded by vegetation.

A wooden cabin interior with a sofa, a dining table, and a chair.

1. Hamadryade Lodge

Misahualli

Gina

£77

25 Oct - 26 Oct

A spacious atrium with a central fountain, wooden railings, and a glass ceiling.

A large indoor swimming pool with lounge chairs and sunbeds around the perimeter.

A traditional chalet-style building with a stone staircase leading to a wooden deck, surrounded by lush greenery.

A courtyard with a central fountain, wooden balconies, and stone flooring.

2. Samari Spa Resort

Baños de Agua Santa

Jennifer L

£165

19 Oct - 20 Oct

A modern room with a large glass window, a black leather chair, a white bathtub, and a small table with a lamp.

An outdoor dining area with a wooden table and chairs, a TV screen displaying a fire, and a decorative metal canopy.

A modern building with a prominent 'Zahiri' sign, featuring a unique angular design and large glass windows.

A modern interior with two blue chairs around a round table, a city view through large windows, and a night-time cityscape visible outside.

3. TRYP by Wyndham Cuenca Zahir

Downtown Cuenca

Luis

£81

25 Oct - 26 Oct

View all properties

Top Ecuadorian Amazon Hotel Reviews

TRYP by Wyndham Cuenca Zahir

10/10 Excellent

"We stayed in the presidential suite and it was quite a wonderful experience. A crib for our daughter was there upon arrival and they even let us in early. There is a deep tub that gets very hot which we were not expecting so that was a lovely surprise. The room does get a bit hot, I am assuming because of the giant windows that collect sunshine, but otherwise, it is an amazing room."

Casa de las Rosas

8/10 Good

"Había leído opiniones un poco preocupantes con respecto a la limpieza del lugar pero debo decir que no fue mi caso. Tuve una habitación con una cama cómoda, lo que hizo mi descanso agradable. El servicio de WiFi si era un poco intermitente y es lo único que me resultó un poco criticable ya que mi estancia fue por temas laborales. Si buscas un lugar económico, accesible y con garage, esta es tu opción"

Explore a world of travel with Expedia

Ecuador Holiday Rentals

Search Boutique Hotels in Ecuadorian Amazon

Change your mind

Treat yourself

Be picky