The best area to stay in Agats is the central waterfront area, particularly around Jalan Yos Sudarso.
This area is the main settlement in Agats and is built on stilts over the water, which is a unique feature of the town. You'll find the primary government buildings, local markets, and most of the available guesthouses and basic facilities concentrated here. It's the most convenient spot for accessing local transport, which often involves small boats or wooden walkways.
For solo travellers, staying near Jalan Yos Sudarso provides the most practical and convenient base. It offers the easiest access to local eateries, the market where you can observe daily life, and the departure points for exploring the surrounding areas.